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Protein Analysis
Top > Biology > Bioinformatics > Online Services > Protein Analysis
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The SWISS-PROT database contains high-quality annotation, is non-redundant and cross-referenced to many other databases. SWISS-PROT is accompanied by TrEMBL, a computer-annotated supplement, which contains the translations of all coding sequences (CDS) present in the EMBL Nucleotide Sequence Database, which are not yet integrated into SWISS-PROT.
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Google PR: An experimental bioinformatics server. Classifies protein sequences as homodimers or non-homodimers. Applications: metabolic reconstruction, protein structure and function assignment, and drug-design.
Details Hits: 1 Votes: 0 Ratings: Reviews: Google PR: In collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japanese International Protein Sequence Database (JIPID) maintains the PIR-International Protein Sequence Database --- a comprehensive, annotated, and non-redundant set of protein sequence databases in which entries are classified into family groups and alignments of each group are available.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: A database built from Pfam, PRINTS and PROSITE.
Details Hits: 1 Votes: 0 Ratings: Reviews: Google PR: Bioinformatics research group offering organism specific information (Yeast, Cress) as well as search tools for public databases.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 6. Protonet
Provides automatic hierarchical classification of proteins sequences.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: Most widely used server for analysing protein sequences, searching protein databases, and predicting protein structure - from Columbia Univ.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: Includes WebOligoMelt (Annealing temperature of oligonucleotides), Virtual Ribosome (translate nucleotide sequences into peptides), and SeqScanGraph (graph melting temperature along nucleotide chain).
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: Collection of human (swall) proteins, crossreferences to major prediction servers. Supported predictions from: smart, string, blast, swall, mapview, sosui, ipsort and ncbi conserved domains.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 10. ProtFun
Ab initio predictions of protein function from protein sequence. The method works by integrating various predicted post-translational and localizational aspects of the proteins submitted.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 11. 3D-JIGSAW
Automated comparative (homology) protein modelling, including an interactive mode which highlights known domains and allows users to select and align templates.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: Combines sequence and structural information for predicting the structure and/or function of your protein sequence, and can detect remote homologies beyond PSI-Blast.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: Ligand search engine to EBI Macromolecule Structure Database. Provides PDB ID codes with further visualization and statistics charts.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 14. Betapred
Prediction of beta turns and their types using statistical algorithms. 5 different methods including Chou-Fasman, Thornton's PRs, Gorbturn, and a consensus of all methods.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 3D protein structure prediction from amino acid sequence. Includes MEMSAT for transmembrane topology prediction, GenTHREADER and mGenTHREADER for fold recognition.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 16. Jpred
Secondary protein structure prediction from amino acid sequence; based on a consensus from several methods including DSC, PHD, NNSSP, PREDATOR, ZPRED, and MULPRED.
Details Hits: 2 Votes: 0 Ratings: Reviews: Google PR: 17. JAligner
Open source Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 18. Swiss-Model
Automated comparative protein modelling server to make protein modelling accessible to biochemists and molecular biologists worldwide - from GlaxoWellcome Experimental Research, Geneva, Switzerland.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 19. Swiss-Pdb Viewer
User-friendly interface allowing analysis of several proteins at once, including superimposition to deduce structural alignments, and compare active sites. From GlaxoWellcome Experimental Research, Geneva, Switzerland.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 20. Proteomics Tools
Online software for protein analysis from the Swiss Institute of Bioinformatics (SIB).
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR:
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