+ Main Category
Biology: 18065
Agriculture: 7682
Horticulture: 3981
Forestry: 843
Geography: 5126
Environment: 5562
Research: 2212
Society: 445
+ Tell a Friend
Fill out the information below to email a friend a brief note about 'TropHort: Biology, Agriculture and Geography'
+ Top 10
+ Directory Statistics
Links: 41699
Categories: 7193
Registered Users: 508
Mailing List Subscribers: 97
+ Pagerank Statistics
+ Join Mailing List
Joining mailing list will entitle you
to receive occasional emails informing you of news and
updates to the site and any special offers that may be
of interest to you.
Software
Top > Biology > Bioinformatics > Software
|
Subscribe to this category
|
Categories
Software Development
(31)
|
Popular Tags
Web Links
1. XDigitize
A Linux/Unix visualization software system for evaluation of hybridisation experiments.
Details Hits: 0 Votes: 0 Ratings: 
Reviews: 
Google PR: 2. HMMER
Profiles protein sequence data using hidden Markov models of a statistical descriptions of a sequence family's consensus. HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 3. Phrap/Consed
DNA sequence assembler and finishing tools from the UW Genome Center.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 4. NCBI BLAST
BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 5. WU-BLAST
The Washington University improved version of BLAST. Free for academic users.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 6. FASTA
William Pearson's package for fast sequence comparison tools.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 7. Darwin
An interactive tool for peptide and nucleotide sequence analysis.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 8. PHRED
A widely-used program for base calling DNA sequencing trace files. Source code available and free for non-commecial users.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 9. GDE
An integrated linux environment for bioinformatics and evolutionary analysis based on the Genetic Data Environment (GDE). Contains binaries for Linux and Mac OS X, documentation, screenshots, references, and organism specific interfaces.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 10. pDRAW32
Freeware DNA cloning, analysis and visualization software.
Details Hits: 3 Votes: 0 Ratings: Reviews: Google PR: A freeware Java application that does many standard types of DNA and protein sequence analysis tasks.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 12. The ARB Project
A free sequence database application for Unix. It includes a sequence editor, several sequence aligners, phylogeny reconstruction tools, probe/primer search and generation, genome annotation and visualization. In addition to the integrated user-interface the ARB database can be accessed using Perl or C.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 13. STRING
Search for Tandem Repeats IN Genomes. Includes C source code and examples.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 14. Sfold
Predicts probable RNA secondary structures, assesses target accessibility, and provides tools for the rational design of RNA-targeting nucleic acids. The web server version is free for academic use.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 15. AnnHyb
Free software for working with and managing nucleotide sequences in multiple formats. Features include sequence annotation, restriction analysis, pattern searching, retrieval from servers. Released under GNU Public Licence.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: NSF supported project to make old computers accessible to new software in bioinformatics. Provides transitional and supplemental support, especially in structual biology, for software packages on various platforms.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 17. limmaGUI
A graphical user interface for linear modelling of cDNA and oligonucleotide microarray data to identify differentially expressed genes.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 18. EMBOSS
The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprietary systems like GCG.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: The MaGe system offers a set of graphical interfaces which allow biologist to perform relevant expert annotation of microbial genomes.
Details Hits: 1 Votes: 0 Ratings: Reviews: Google PR: 20. STRAP
Software supports the analysis of hundreds of proteins and integrates aa sequence, secondary structure, 3D-structure and genomic- and mRNA-sequence, and residue annotation.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR:
|
Subscribe to this category
|
