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Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format.
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Computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions.
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An Linux assembly editing and visualization tool specifically designed for manual analysis and finishing of repeated regions.
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An integrated multiple structure visualization and multiple sequence alignment application. Avaliable for Windows, Linux
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Open source software developed by Timo Lassmann for multiple sequence alignment, including Kalign, Kalignvu and Mumsa.
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Small free Windows program to calculate nucleotides frequencies in DNA sequences.
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Free Windows tool for merging multiple FASTA files into a single FASTA file.
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A tool designed for efficient knowledge and data capture from electronic resources for sharing, mining and presentation purposes.
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MARBL is a free (GPL) system to index the text portions of GenBank and associated NLM abstracts. Based on Mumps and the MDH.
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Commercial graphical software for Blast searches.
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Text mining tool for genomics, proteomics platforms and drug discovery.
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A Java tool to sort phylogenetic trees by searching for user-specified subtrees that contain a monophyletic group of interest defined by operational taxonomic units.
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