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Software Development
Top > Biology > Bioinformatics > Software > Software Development
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1. Bioperl.org
The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an online resource for modules, scripts, and web links.
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Google PR: 2. BioJava.org
The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.
Details Hits: 1 Votes: 0 Ratings: Reviews: Google PR: 3. BioPython
The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 4. AceDB
A hierarchical database system for displaying genomic data (originally C. elegans), suitable also for displaying other scientific data.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: BiBiServ supports Internet-based collaborative research, software development and distance education in bioinformatics.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 6. AcePerl
OO Interface to AceDB
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: The Bioconductor project produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary emphasis on inference using DNA microarrays, built mostly using R.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 8. BioQuery
Tools that searches multiple biomedical databases from your desktop.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: C++ framework for rapid software prototyping in molecular modeling.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: Analytical tools and SQL scripts that solve common problems in drug discovery.
Details Hits: 1 Votes: 0 Ratings: Reviews: Google PR: PAL library is a Java toolkit for determining evolutionary trends.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 12. MolTalk
Software development for structural bioinformatics. Runs on Unix, Windows and MacOSX.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 13. BioPHP
An open source project to develop PHP code and scripts for biocomputing. A wiki-like service allows collaboration between developers.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 14. BioRuby
BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 15. NeoBio
An open source library of Java bioinformatics algorithms. The current version consists mainly of sequence alignment algorithms such as Needleman- Wunsch and Smith-Waterman.
Details Hits: 1 Votes: 0 Ratings: Reviews: Google PR: 16. Dynamite
Code generator for writing dynamic programming programs.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 17. Boulder.pm
Simple but powerful data exchange language, suitable for serializing biological data objects.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 18. InterMine
InterMine is an general-purpose object-oriented data warehouse system developed as part of the FlyMine project and made available as stand-alone open-source software.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 19. EST2uni
A tool to analyze a set of ESTs. Cleans, clusters and annotates the sequences and prepares a web site to browse the results in a complete automatic way.
Details Hits: 4 Votes: 0 Ratings: Reviews: Google PR: 20. Sight
Extendable parallel system for automatic genome analysis. Software for analysing all potential genes in a defined genome region. Given two marker names, can output reports of genomic features between them. Features for converting between naming systems, sequence retrieval, E-PCR, gene prediction, similarity search, protein pattern search, and report formatting. Written in Java.
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