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Scansite
38305
Scansite
http://scansite.mit.edu/
Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains.
Biology > Bioinformatics > Online Services
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services
1. InstaSeq
Google-based search engine for DNA, RNA or Protein sequences.
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Offers a number of educational programs including LESLIE, LOGIST, CHAOS, CELLS, WITCOM, PRED and LEWONTIN.
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Free service for retrieving all synonyms for a given gene or protein name.
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LGICdb is a curated repository of genes coding for subunits of Ligand-Gated Ion Channels.
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An interesting tool to discover and visualize over- or under-represented words in genetic sequences. Requires Java support in browser. Also available as a downloadable program.
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6. ERGO
Online service integrating biological data from genomics, biochemistry, genetics and high-throughput expression profiling, to achieve a comprehensive pattern-based analysis of genes and genomes.
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7. ParAlign
Service using the ParAlign algorithm to compare genetic sequences. Apparently it is as fast as BLAST and as sensitive as Smith-Waterman.
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8. Mulan
Performs single-coverage local multiple DNA sequence alignments of finished and draft-quality genome sequences. It also provides with an option to predict transcription factor binding sites evolutionarily conserved across multiple species.
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9. PANDORA
Protein ANnotation Diagram ORiented Analysis service that extracts biological information from user supplied sequences.
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10. PEDANT
Completely automatic and exhaustive analysis of protein sequence sets - from individual sequences to complete genomes
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