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YMF - DNA Motif Finding Program
38310
YMF - DNA Motif Finding Program
http://abstract.cs.washington.edu/~saurabh/YMFWeb/YMFInput.pl
Finds novel transcription factor binding sites by searching for over-represented (most significant motifs) motifs in DNA sequences.
Biology > Bioinformatics > Online Services
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services
Gene sequence extraction of regions around the 5'-end (promoter) and/or the translation initiation site (TIS) of a gene.
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A Malaysian Genomics toolset for high-throughput analysis of biological data. Must register to use.
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3. Bioverse
Provides a framework for exploring the relationships among the molecular, genomic, proteomic, systems, and organismal worlds.
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4. PubCrawler
An online service for periodically performing predefined searches at NCBI, reporting new results by email or on the web.
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Service for the identification of bacteria and fungi sequences by sequence alignment.
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Very helpful software for locating and displaying transcription factor binding sites within DNA sequences - from the Univ. of Penn.
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Online services including T-Coffee, El-Nemo, Casper and FeeBack.
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8. BioGRID
Database of genetic and physical interactions. It contains interaction data from many sources, including several genome/proteome-wide studies, the MIPS database, and BIND.
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Offers a number of educational programs including LESLIE, LOGIST, CHAOS, CELLS, WITCOM, PRED and LEWONTIN.
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Online version of the program for populational genetics.
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