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BIOBASE
38312
BIOBASE
http://www.gene-regulation.com/
are regulatory genomic signals and regions that govern transcriptional control based on TRANSFAC - The Transcription Factor Database. It compiles data about gene regulatory DNA sequences and protein factors binding to and acting through them.
Biology > Bioinformatics > Online Services
genregulation gene regulation gene-regulation biobase datenbank datenbanken database databases biotechnologie biotechnology transfac pathodb
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services
Hosts Irish embnet node, Gives links to Database browsing and interrogation at SRS, European (EBI) servers, Blast server for parasite genomes (EBI), US (NCBI) servers, Protein structure prediction, PredictProtein Server in Heidelberg, Gene identification, splice sites, exons, introns and a list of gene structure prediction programs
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Finds novel transcription factor binding sites by searching for over-represented (most significant motifs) motifs in DNA sequences.
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MINT is a database designed to store functional interactions between biological molecules (proteins, RNA, DNA).
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5. PANDORA
Protein ANnotation Diagram ORiented Analysis service that extracts biological information from user supplied sequences.
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Consolidates evidence for gene-gene interactions from HPRD, BIND, Reactome, KEGG, GO, microarray co-expression and Y2H experiments. Beautiful site design.
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7. MedMiner
An Internet biomedical data-mining tool for organizing search information gathered from textual or genetic databases - from the NIH National Cancer Inst.
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Online services including T-Coffee, El-Nemo, Casper and FeeBack.
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User guides and worked examples for software applications in structural and molecular biology - from Yale Univ.
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10. WebACT
A database of sequence comparisons between all publicly available prokaryotic genome sequences, allowing the on-line visualisation of comparisons between up to five genomic sequences, using the Artemis Comparison Tool. User can perform their comparisons on their own data.
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