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PlasMapper
38315
PlasMapper
http://wishart.biology.ualberta.ca/PlasMapper/index.html
Online service to generate annotated plasmid maps up to 20 kbp. Outputs in PNG, JPG, SVG or SVGZ format.
Biology > Bioinformatics > Online Services
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services
1. Carnac
A free software tool for analysing the hypothetical secondary structure of a family of homologous RNA.
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2. BioGRID
Database of genetic and physical interactions. It contains interaction data from many sources, including several genome/proteome-wide studies, the MIPS database, and BIND.
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4. PANDORA
Protein ANnotation Diagram ORiented Analysis service that extracts biological information from user supplied sequences.
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GeneBio provides proteomics software tools and databases including SWISS-PROT, PROSITE, SWISS-2DPAGE and Melanie. We also offer a secure version of ExPASy molecular biology web server.
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6. PubCrawler
An online service for periodically performing predefined searches at NCBI, reporting new results by email or on the web.
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Normalization tests for differentially expressed genes, clustering, bootstrapping, leave-one-out validation, cross-fold validation.
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8. InstaSeq
Google-based search engine for DNA, RNA or Protein sequences.
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9. PEDANT
Completely automatic and exhaustive analysis of protein sequence sets - from individual sequences to complete genomes
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Very helpful software for locating and displaying transcription factor binding sites within DNA sequences - from the Univ. of Penn.
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