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ParAlign
38320
ParAlign
http://www.paralign.org/
Service using the ParAlign algorithm to compare genetic sequences. Apparently it is as fast as BLAST and as sensitive as Smith-Waterman.
Biology > Bioinformatics > Online Services
homology search alignment alignments bioinformatics biocomputing sequence searching searches sequences smith-waterman computational biology paralign similar similarities databases simd mmx sse sse2 altivec
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services
An interesting tool to discover and visualize over- or under-represented words in genetic sequences. Requires Java support in browser. Also available as a downloadable program.
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A meta-server and decision support system for Protein Comparison, Knowledge, Similarity and Information, using protein contact maps.
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6. Mulan
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Hosts Irish embnet node, Gives links to Database browsing and interrogation at SRS, European (EBI) servers, Blast server for parasite genomes (EBI), US (NCBI) servers, Protein structure prediction, PredictProtein Server in Heidelberg, Gene identification, splice sites, exons, introns and a list of gene structure prediction programs
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LGICdb is a curated repository of genes coding for subunits of Ligand-Gated Ion Channels.
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Online program that calculates the distribution of offspring genotypes from dominant, codominant and recessive gene crosses, for up to 6 genes.
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