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Systems Biology of Photosynthesis

38321 Systems Biology of Photosynthesis http://www.e-photosynthesis.org Open web platform for modeling and reverse engineering of photosynthetic dynamism. Biology > Bioinformatics > Online Services systems   biology   mathematical   modeling   regulatory   networks   reverse   engineering   photosynthesic   process   photosynthesis   photosystem   ii   i   pq   pool   plastoquinon   canopy   modelling   light   reactions   dark   system   kinetics   state   space Jan 6, 2008  

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Other links at Biology > Bioinformatics > Online Services

proteomics (Genome Wise Sequence Similarity Search, Spectral Repeat Finder, 2D Gel Comparison, protein coding gene by Fast Fourier Transform), and biological databases.
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Provides a framework for exploring the relationships among the molecular, genomic, proteomic, systems, and organismal worlds.
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Offers more than 30 online services for DNA and protein bioinformatics analysis.
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SANBI aims to bring genome information, computational biology, and analytical tools to the South African research community. Hosts SA National EMBNet Node, provides links to Sequence Retrieval System (SRS), GeneKraal, and TB Genomes Analysis Server. Research in Sequence Tag Alignment and Consensus Knowledgebase (STACK). Databases include BLAST search in Mycobacterium genome.
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are regulatory genomic signals and regions that govern transcriptional control based on TRANSFAC - The Transcription Factor Database. It compiles data about gene regulatory DNA sequences and protein factors binding to and acting through them.
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Very helpful software for locating and displaying transcription factor binding sites within DNA sequences - from the Univ. of Penn.
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Performs single-coverage local multiple DNA sequence alignments of finished and draft-quality genome sequences. It also provides with an option to predict transcription factor binding sites evolutionarily conserved across multiple species.
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Helps users design zinc finger transcription factors.
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An interesting tool to discover and visualize over- or under-represented words in genetic sequences. Requires Java support in browser. Also available as a downloadable program.
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LGICdb is a curated repository of genes coding for subunits of Ligand-Gated Ion Channels.
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