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ERGO
38322
ERGO
http://ergo.integratedgenomics.com/ERGO/
Online service integrating biological data from genomics, biochemistry, genetics and high-throughput expression profiling, to achieve a comprehensive pattern-based analysis of genes and genomes.
Biology > Bioinformatics > Online Services
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services
1. TFM Explorer
Scans sequences for potential Transcription Factor binding sites using Patser and TRANSFAC.
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A meta-server and decision support system for Protein Comparison, Knowledge, Similarity and Information, using protein contact maps.
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A commercial service for improving the read length and quality of ABI 3730, 3130 and 3100 DNA sequencing traces. Works via reprocessing of the raw peak data before re-base calling. A free trial is provided.
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Transterm - an interactive database of mRNA regions and motifs from all species and genomes. Users can browse the pre-computed data tables, search the sequence databases or search their own sequences.
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5. InstaSeq
Google-based search engine for DNA, RNA or Protein sequences.
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6. ParAlign
Service using the ParAlign algorithm to compare genetic sequences. Apparently it is as fast as BLAST and as sensitive as Smith-Waterman.
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Consolidates evidence for gene-gene interactions from HPRD, BIND, Reactome, KEGG, GO, microarray co-expression and Y2H experiments. Beautiful site design.
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8. ProPred-I
An online service for predicting MHC binding regions in antigens. It also offers the proteasomal and immunoproteasomal filters to improve the applicability of results.
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9. BIOBASE
are regulatory genomic signals and regions that govern transcriptional control based on TRANSFAC - The Transcription Factor Database. It compiles data about gene regulatory DNA sequences and protein factors binding to and acting through them.
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Online version of the program for populational genetics.
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