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BioModels Database
38330
BioModels Database
http://www.ebi.ac.uk/biomodels/
Resource for storing, searching and retrieving published mathematical models of biological interests. Models present in BioModels Database are annotated and linked to relevant data resources, such as publications, databases of compounds and pathways, controlled vocabularies, etc.
Biology > Bioinformatics > Online Services
nicolas le novere ebi embl sbml bioinformatics software databases genomics computational neurobiology neuroinformatics systems biology
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services
Online version of the program for populational genetics.
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User guides and worked examples for software applications in structural and molecular biology - from Yale Univ.
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Hosts Irish embnet node, Gives links to Database browsing and interrogation at SRS, European (EBI) servers, Blast server for parasite genomes (EBI), US (NCBI) servers, Protein structure prediction, PredictProtein Server in Heidelberg, Gene identification, splice sites, exons, introns and a list of gene structure prediction programs
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A Suite of Online tools for analysis of DNA/RNA, Proteins, and Arrays.
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5. PEDANT
Completely automatic and exhaustive analysis of protein sequence sets - from individual sequences to complete genomes
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6. Scansite
Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains.
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A Malaysian Genomics toolset for high-throughput analysis of biological data. Must register to use.
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Normalization tests for differentially expressed genes, clustering, bootstrapping, leave-one-out validation, cross-fold validation.
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An interesting tool to discover and visualize over- or under-represented words in genetic sequences. Requires Java support in browser. Also available as a downloadable program.
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10. PANDORA
Protein ANnotation Diagram ORiented Analysis service that extracts biological information from user supplied sequences.
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