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Gene Expression Data Analysis

38332 Gene Expression Data Analysis http://bioinformatics.upmc.edu/GE2/GEDA.html Normalization tests for differentially expressed genes, clustering, bootstrapping, leave-one-out validation, cross-fold validation. Biology > Bioinformatics > Online Services geda   geneexpression   gene   expression   data   analysis   microarray   statistical   genomics   machine   learning   bootstrap   cross-validation   clustering   differentially   expressed   genes   cancer   simulation   sam   software Jan 6, 2008  

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Other links at Biology > Bioinformatics > Online Services

A database of sequence comparisons between all publicly available prokaryotic genome sequences, allowing the on-line visualisation of comparisons between up to five genomic sequences, using the Artemis Comparison Tool. User can perform their comparisons on their own data.
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Tools and methods for computational biology. Working on secondary protein structure prediction, providing reliable profiles, and developing new ways to study molecular biology through bioinformatics.
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An Internet biomedical data-mining tool for organizing search information gathered from textual or genetic databases - from the NIH National Cancer Inst.
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Finds novel transcription factor binding sites by searching for over-represented (most significant motifs) motifs in DNA sequences.
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3730xl traces files.
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A Suite of Online tools for analysis of DNA/RNA, Proteins, and Arrays.
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Online version of the program for populational genetics.
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Several genomics and proteomics tools, including multiple alignments, gene expression analysis, tandem repeat and motif discovery.
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A commercial service for improving the read length and quality of ABI 3730, 3130 and 3100 DNA sequencing traces. Works via reprocessing of the raw peak data before re-base calling. A free trial is provided.
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Database of genetic and physical interactions. It contains interaction data from many sources, including several genome/proteome-wide studies, the MIPS database, and BIND.
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