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JustBio: Online Tool Set
38335
JustBio: Online Tool Set
http://www.justbio.com/tools.php
A Suite of Online tools for analysis of DNA/RNA, Proteins, and Arrays.
Biology > Bioinformatics > Online Services
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services
Hosts Irish embnet node, Gives links to Database browsing and interrogation at SRS, European (EBI) servers, Blast server for parasite genomes (EBI), US (NCBI) servers, Protein structure prediction, PredictProtein Server in Heidelberg, Gene identification, splice sites, exons, introns and a list of gene structure prediction programs
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proteomics (Genome Wise Sequence Similarity Search, Spectral Repeat Finder, 2D Gel Comparison, protein coding gene by Fast Fourier Transform), and biological databases.
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BIND is a database designed to store full descriptions of interactions, molecular complexes and pathways.
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5. TFM Explorer
Scans sequences for potential Transcription Factor binding sites using Patser and TRANSFAC.
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Consolidates evidence for gene-gene interactions from HPRD, BIND, Reactome, KEGG, GO, microarray co-expression and Y2H experiments. Beautiful site design.
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A Malaysian Genomics toolset for high-throughput analysis of biological data. Must register to use.
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8. PlasMapper
Online service to generate annotated plasmid maps up to 20 kbp. Outputs in PNG, JPG, SVG or SVGZ format.
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Retrieves molecular biology data and bibliographic citations from the NCBI's integrated databases.
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10. iHOP
Uses the network of genes and proteins as a natural way of accessing the millions of biomedical abstracts in PubMed.
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