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Bacterial Identification
38341
Bacterial Identification
http://pbil.univ-lyon1.fr/bibi/query.php
Service for the identification of bacteria and fungi sequences by sequence alignment.
Biology > Bioinformatics > Online Services
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services
1. InstaSeq
Google-based search engine for DNA, RNA or Protein sequences.
Category:
A meta-server and decision support system for Protein Comparison, Knowledge, Similarity and Information, using protein contact maps.
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4. ParAlign
Service using the ParAlign algorithm to compare genetic sequences. Apparently it is as fast as BLAST and as sensitive as Smith-Waterman.
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5. iHOP
Uses the network of genes and proteins as a natural way of accessing the millions of biomedical abstracts in PubMed.
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6. BioGRID
Database of genetic and physical interactions. It contains interaction data from many sources, including several genome/proteome-wide studies, the MIPS database, and BIND.
Category:
proteomics (Genome Wise Sequence Similarity Search, Spectral Repeat Finder, 2D Gel Comparison, protein coding gene by Fast Fourier Transform), and biological databases.
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Very helpful software for locating and displaying transcription factor binding sites within DNA sequences - from the Univ. of Penn.
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9. PANDORA
Protein ANnotation Diagram ORiented Analysis service that extracts biological information from user supplied sequences.
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MINT is a database designed to store functional interactions between biological molecules (proteins, RNA, DNA).
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