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The Protein Information Resource
38401
The Protein Information Resource
http://pir.georgetown.edu
In collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japanese International Protein Sequence Database (JIPID) maintains the PIR-International Protein Sequence Database --- a comprehensive, annotated, and non-redundant set of protein sequence databases in which entries are classified into family groups and alignments of each group are available.
Biology > Bioinformatics > Online Services > Protein Analysis
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services > Protein Analysis
Bioinformatics research group offering organism specific information (Yeast, Cress) as well as search tools for public databases.
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2. MultiProt
Service for detecting the multiple structural alignments of proteins. Uses the common geometrical cores between the input molecules. Does not require that all the input molecules participate in the alignment.
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Online backtranslation tool for translating a protein sequence into a DNA sequence. The codon usage can be downloaded from a database and adjusted manually for each amino acid, if required. Java applet.
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4. COLORADO3D
Service to aid visualisation of potential errors in protein structures. Free for academic users.
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Calculated using the FASTA amino acid sequence and pKa values for. Allows consideration of post-translational modifications.
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6. MSDmotif
Service for protein sequence motifs detection. Search based on the small 3D motifs defined by J.Milner-White.
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An experimental bioinformatics server. Classifies protein sequences as homodimers or non-homodimers. Applications: metabolic reconstruction, protein structure and function assignment, and drug-design.
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Powerful, state-of-the-art, 2-D analysis software package with user-friendly interface from the Swiss Institute of Bioinformatics.
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9. iMolTalk
Provides protein structure information such as structural alignment, residue contact, protein-protein interfaces, contact maps and general information extraction.
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10. Dali server
The Dali server is a network service for comparing protein structures in 3D.
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