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InterPro - The Integrated Resource of Protein Domains and Functional Sites.
38402
InterPro - The Integrated Resource of Protein Domains and Functional Sites.
http://www.ebi.ac.uk/interpro/
A database built from Pfam, PRINTS and PROSITE.
Biology > Bioinformatics > Online Services > Protein Analysis
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services > Protein Analysis
1. MODBASE
A database of annotated comparative protein structure models. The database includes fold assignments and alignments as well as information about putative ligand binding sites, SNP annotation, and protein-protein interactions.
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2. MultiProt
Service for detecting the multiple structural alignments of proteins. Uses the common geometrical cores between the input molecules. Does not require that all the input molecules participate in the alignment.
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3. Dali server
The Dali server is a network service for comparing protein structures in 3D.
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4. Jpred
Secondary protein structure prediction from amino acid sequence; based on a consensus from several methods including DSC, PHD, NNSSP, PREDATOR, ZPRED, and MULPRED.
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Accepts a single query protein sequence and returns the most probable Gene Ontology functional annotations in each of the three ontologies.
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Calculated using the FASTA amino acid sequence and pKa values for. Allows consideration of post-translational modifications.
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SPORes is a website for protein structure prediction using the web browser as an interface to software that runs of web servers or other resources available over the world wide web.
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Ligand search engine to EBI Macromolecule Structure Database. Provides PDB ID codes with further visualization and statistics charts.
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9. 3D-JIGSAW
Automated comparative (homology) protein modelling, including an interactive mode which highlights known domains and allows users to select and align templates.
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10. MSDmotif
Service for protein sequence motifs detection. Search based on the small 3D motifs defined by J.Milner-White.
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