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Protonet
38404
Protonet
http://www.protonet.cs.huji.ac.il
Provides automatic hierarchical classification of proteins sequences.
Biology > Bioinformatics > Online Services > Protein Analysis
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Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services > Protein Analysis
1. Dali server
The Dali server is a network service for comparing protein structures in 3D.
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2. ProtFun
Ab initio predictions of protein function from protein sequence. The method works by integrating various predicted post-translational and localizational aspects of the proteins submitted.
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In collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japanese International Protein Sequence Database (JIPID) maintains the PIR-International Protein Sequence Database --- a comprehensive, annotated, and non-redundant set of protein sequence databases in which entries are classified into family groups and alignments of each group are available.
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Combines sequence and structural information for predicting the structure and/or function of your protein sequence, and can detect remote homologies beyond PSI-Blast.
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5. Wurst
A protein threading server using sequence profiles combined with a protein sequence to structure compatibility function based on Bayesian statistics.
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6. JAligner
Open source Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.
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Online software for protein analysis from the Swiss Institute of Bioinformatics (SIB).
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Most widely used server for analysing protein sequences, searching protein databases, and predicting protein structure - from Columbia Univ.
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An experimental bioinformatics server. Classifies protein sequences as homodimers or non-homodimers. Applications: metabolic reconstruction, protein structure and function assignment, and drug-design.
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10. MODBASE
A database of annotated comparative protein structure models. The database includes fold assignments and alignments as well as information about putative ligand binding sites, SNP annotation, and protein-protein interactions.
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