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PredictProtein Server
38405
PredictProtein Server
http://cubic.bioc.columbia.edu/predictprotein/
Most widely used server for analysing protein sequences, searching protein databases, and predicting protein structure - from Columbia Univ.
Biology > Bioinformatics > Online Services > Protein Analysis
bioinformatics protein (secondary) structure (solvent accessibility) prediction transmembrane helices integral membrane proteins sequence analysis evolution multiple alignments neural networks artificial intelligence pred
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services > Protein Analysis
User-friendly interface allowing analysis of several proteins at once, including superimposition to deduce structural alignments, and compare active sites. From GlaxoWellcome Experimental Research, Geneva, Switzerland.
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2. ConSurf
Identifies functionally important regions on the surface of a protein or domain, of known three-dimensional (3D) structure using the phylogenetic relations between close sequence homologues.
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3. iMolTalk
Provides protein structure information such as structural alignment, residue contact, protein-protein interfaces, contact maps and general information extraction.
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Predicts functional sites (linear motifs) in proteins, such as post-translational modification sites, ligand motifs, and targeting signals. Context-based rules and logical filters are applied to improve predictions.
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Includes WebOligoMelt (Annealing temperature of oligonucleotides), Virtual Ribosome (translate nucleotide sequences into peptides), and SeqScanGraph (graph melting temperature along nucleotide chain).
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6. JAligner
Open source Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.
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3D protein structure prediction from amino acid sequence. Includes MEMSAT for transmembrane topology prediction, GenTHREADER and mGenTHREADER for fold recognition.
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8. Jpred
Secondary protein structure prediction from amino acid sequence; based on a consensus from several methods including DSC, PHD, NNSSP, PREDATOR, ZPRED, and MULPRED.
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9. Protonet
Provides automatic hierarchical classification of proteins sequences.
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Phyre is a free for academics service for predicting the 3-dimensional structure of a protein amino acid sequence.
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