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EMBL Bioinformatic Harvester
38407
EMBL Bioinformatic Harvester
http://harvester.embl.de
Collection of human (swall) proteins, crossreferences to major prediction servers. Supported predictions from: smart, string, blast, swall, mapview, sosui, ipsort and ncbi conserved domains.
Biology > Bioinformatics > Online Services > Protein Analysis
bioinformatic harvester embl heidelberg
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services > Protein Analysis
1. ProtFun
Ab initio predictions of protein function from protein sequence. The method works by integrating various predicted post-translational and localizational aspects of the proteins submitted.
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Ligand search engine to EBI Macromolecule Structure Database. Provides PDB ID codes with further visualization and statistics charts.
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In collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japanese International Protein Sequence Database (JIPID) maintains the PIR-International Protein Sequence Database --- a comprehensive, annotated, and non-redundant set of protein sequence databases in which entries are classified into family groups and alignments of each group are available.
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Most widely used server for analysing protein sequences, searching protein databases, and predicting protein structure - from Columbia Univ.
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5. Dali server
The Dali server is a network service for comparing protein structures in 3D.
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Search engine for visualizing 3-D biomolecular models. From the Center for Molecular Modeling, NIH, Maryland.
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Predicts functional sites (linear motifs) in proteins, such as post-translational modification sites, ligand motifs, and targeting signals. Context-based rules and logical filters are applied to improve predictions.
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8. Wurst
A protein threading server using sequence profiles combined with a protein sequence to structure compatibility function based on Bayesian statistics.
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Includes WebOligoMelt (Annealing temperature of oligonucleotides), Virtual Ribosome (translate nucleotide sequences into peptides), and SeqScanGraph (graph melting temperature along nucleotide chain).
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SPORes is a website for protein structure prediction using the web browser as an interface to software that runs of web servers or other resources available over the world wide web.
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