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Protein Structure Prediction Server (PSIPRED)

38413 Protein Structure Prediction Server (PSIPRED) http://bioinf.cs.ucl.ac.uk/psipred/ 3D protein structure prediction from amino acid sequence. Includes MEMSAT for transmembrane topology prediction, GenTHREADER and mGenTHREADER for fold recognition. Biology > Bioinformatics > Online Services > Protein Analysis secondary   structure   prediction   membrane   transmembrane   memsat   software   jones   ucl   bioinformatics   modeling   genthreader   psipred   fold   recognition Jan 6, 2008  

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Other links at Biology > Bioinformatics > Online Services > Protein Analysis

Search engine for visualizing 3-D biomolecular models. From the Center for Molecular Modeling, NIH, Maryland.
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Automated comparative protein modelling server to make protein modelling accessible to biochemists and molecular biologists worldwide - from GlaxoWellcome Experimental Research, Geneva, Switzerland.
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Phyre is a free for academics service for predicting the 3-dimensional structure of a protein amino acid sequence.
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A protein threading server using sequence profiles combined with a protein sequence to structure compatibility function based on Bayesian statistics.
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SPORes is a website for protein structure prediction using the web browser as an interface to software that runs of web servers or other resources available over the world wide web.
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Accepts a single query protein sequence and returns the most probable Gene Ontology functional annotations in each of the three ontologies.
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Predicts functional sites (linear motifs) in proteins, such as post-translational modification sites, ligand motifs, and targeting signals. Context-based rules and logical filters are applied to improve predictions.
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Finds Nuclease-Associated Modular DNA-binding Domains (NUMODs) in protein sequences
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Automated comparative (homology) protein modelling, including an interactive mode which highlights known domains and allows users to select and align templates.
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Online software for protein analysis from the Swiss Institute of Bioinformatics (SIB).
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