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Swiss-Model
38416
Swiss-Model
http://swissmodel.expasy.org//SWISS-MODEL.html
Automated comparative protein modelling server to make protein modelling accessible to biochemists and molecular biologists worldwide - from GlaxoWellcome Experimental Research, Geneva, Switzerland.
Biology > Bioinformatics > Online Services > Protein Analysis
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services > Protein Analysis
Ligand search engine to EBI Macromolecule Structure Database. Provides PDB ID codes with further visualization and statistics charts.
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Online backtranslation tool for translating a protein sequence into a DNA sequence. The codon usage can be downloaded from a database and adjusted manually for each amino acid, if required. Java applet.
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Calculated using the FASTA amino acid sequence and pKa values for. Allows consideration of post-translational modifications.
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Combines sequence and structural information for predicting the structure and/or function of your protein sequence, and can detect remote homologies beyond PSI-Blast.
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analysis programs - from GBF, Braunschweig, Germany.
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Powerful, state-of-the-art, 2-D analysis software package with user-friendly interface from the Swiss Institute of Bioinformatics.
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7. MultiProt
Service for detecting the multiple structural alignments of proteins. Uses the common geometrical cores between the input molecules. Does not require that all the input molecules participate in the alignment.
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8. 3D-JIGSAW
Automated comparative (homology) protein modelling, including an interactive mode which highlights known domains and allows users to select and align templates.
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9. COLORADO3D
Service to aid visualisation of potential errors in protein structures. Free for academic users.
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10. Jpred
Secondary protein structure prediction from amino acid sequence; based on a consensus from several methods including DSC, PHD, NNSSP, PREDATOR, ZPRED, and MULPRED.
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