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Proteomics Tools
38418
Proteomics Tools
http://www.expasy.org/tools/
Online software for protein analysis from the Swiss Institute of Bioinformatics (SIB).
Biology > Bioinformatics > Online Services > Protein Analysis
protein sequence structure modeling bioinformatics computational biology genetics evolution phylogeny molecular cell prediction motifs characterization page peptide enzyme techniques protocols research biotechnology biochemistr
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services > Protein Analysis
1. ESyPred3D
ESyPred3D is an automated homology modeling program getting benefit of the increased alignment performances of a new alignment strategy using neural networks. The final three dimensional structure is built using the modeling package MODELLER.
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2. iMolTalk
Provides protein structure information such as structural alignment, residue contact, protein-protein interfaces, contact maps and general information extraction.
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3. JAligner
Open source Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.
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Includes WebOligoMelt (Annealing temperature of oligonucleotides), Virtual Ribosome (translate nucleotide sequences into peptides), and SeqScanGraph (graph melting temperature along nucleotide chain).
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5. Wurst
A protein threading server using sequence profiles combined with a protein sequence to structure compatibility function based on Bayesian statistics.
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A database built from Pfam, PRINTS and PROSITE.
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Accepts a single query protein sequence and returns the most probable Gene Ontology functional annotations in each of the three ontologies.
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Powerful, state-of-the-art, 2-D analysis software package with user-friendly interface from the Swiss Institute of Bioinformatics.
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9. 3D-JIGSAW
Automated comparative (homology) protein modelling, including an interactive mode which highlights known domains and allows users to select and align templates.
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10. Molecules To Go
Search engine for visualizing 3-D biomolecular models. From the Center for Molecular Modeling, NIH, Maryland.
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