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iMolTalk
38422
iMolTalk
http://i.moltalk.org
Provides protein structure information such as structural alignment, residue contact, protein-protein interfaces, contact maps and general information extraction.
Biology > Bioinformatics > Online Services > Protein Analysis
imoltalk structural bioinformatics scientific analysis toolkit protein homology modeling
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services > Protein Analysis
1. DisEMBL
Computational tool for sequence based prediction of intrinsic protein disorder and unstructured regions within a protein.
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2. JAligner
Open source Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.
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Online software for protein analysis from the Swiss Institute of Bioinformatics (SIB).
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Combines sequence and structural information for predicting the structure and/or function of your protein sequence, and can detect remote homologies beyond PSI-Blast.
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5. Dali server
The Dali server is a network service for comparing protein structures in 3D.
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6. UniProt
UniProt (Universal Protein Resource) is a comprehensive catalog of information on proteins. It is a central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR.
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Phyre is a free for academics service for predicting the 3-dimensional structure of a protein amino acid sequence.
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In collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japanese International Protein Sequence Database (JIPID) maintains the PIR-International Protein Sequence Database --- a comprehensive, annotated, and non-redundant set of protein sequence databases in which entries are classified into family groups and alignments of each group are available.
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9. Betapred
Prediction of beta turns and their types using statistical algorithms. 5 different methods including Chou-Fasman, Thornton's PRs, Gorbturn, and a consensus of all methods.
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Includes WebOligoMelt (Annealing temperature of oligonucleotides), Virtual Ribosome (translate nucleotide sequences into peptides), and SeqScanGraph (graph melting temperature along nucleotide chain).
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