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COLORADO3D
38430
COLORADO3D
http://asia.genesilico.pl/colorado3d/
Service to aid visualisation of potential errors in protein structures. Free for academic users.
Biology > Bioinformatics > Online Services > Protein Analysis
bioinformatics structural biology servers
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services > Protein Analysis
1. DisEMBL
Computational tool for sequence based prediction of intrinsic protein disorder and unstructured regions within a protein.
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Bioinformatics research group offering organism specific information (Yeast, Cress) as well as search tools for public databases.
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Calculated using the FASTA amino acid sequence and pKa values for. Allows consideration of post-translational modifications.
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4. SSM
Provides interactive service for matching protein structures in 3D and looking for structural homologues in PDB and SCOP databases, as well as in user-uploaded sets of structures.
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analysis programs - from GBF, Braunschweig, Germany.
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Accepts a single query protein sequence and returns the most probable Gene Ontology functional annotations in each of the three ontologies.
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In collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japanese International Protein Sequence Database (JIPID) maintains the PIR-International Protein Sequence Database --- a comprehensive, annotated, and non-redundant set of protein sequence databases in which entries are classified into family groups and alignments of each group are available.
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8. Jpred
Secondary protein structure prediction from amino acid sequence; based on a consensus from several methods including DSC, PHD, NNSSP, PREDATOR, ZPRED, and MULPRED.
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Online backtranslation tool for translating a protein sequence into a DNA sequence. The codon usage can be downloaded from a database and adjusted manually for each amino acid, if required. Java applet.
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10. ESyPred3D
ESyPred3D is an automated homology modeling program getting benefit of the increased alignment performances of a new alignment strategy using neural networks. The final three dimensional structure is built using the modeling package MODELLER.
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