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MSDmotif
38432
MSDmotif
http://www.ebi.ac.uk/msd-srv/msdmotif/
Service for protein sequence motifs detection. Search based on the small 3D motifs defined by J.Milner-White.
Biology > Bioinformatics > Online Services > Protein Analysis
small 3d motif ligand binding protein structure beta-turn asx-motif asx-turn st-motif st-turn nest catmat st-staple beta-bulge loop alphabeta-motif left handed helix gamma-turn schellmann super s
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services > Protein Analysis
1. SSM
Provides interactive service for matching protein structures in 3D and looking for structural homologues in PDB and SCOP databases, as well as in user-uploaded sets of structures.
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Finds Nuclease-Associated Modular DNA-binding Domains (NUMODs) in protein sequences
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3. COLORADO3D
Service to aid visualisation of potential errors in protein structures. Free for academic users.
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4. DisEMBL
Computational tool for sequence based prediction of intrinsic protein disorder and unstructured regions within a protein.
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5. 3D-JIGSAW
Automated comparative (homology) protein modelling, including an interactive mode which highlights known domains and allows users to select and align templates.
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6. JAligner
Open source Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.
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SPORes is a website for protein structure prediction using the web browser as an interface to software that runs of web servers or other resources available over the world wide web.
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8. ProtFun
Ab initio predictions of protein function from protein sequence. The method works by integrating various predicted post-translational and localizational aspects of the proteins submitted.
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9. MSDmotif
Service for protein sequence motifs detection. Search based on the small 3D motifs defined by J.Milner-White.
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10. Proteomics Tools
Online software for protein analysis from the Swiss Institute of Bioinformatics (SIB).
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