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Wurst
38436
Wurst
http://www.zbh.uni-hamburg.de/wurst
A protein threading server using sequence profiles combined with a protein sequence to structure compatibility function based on Bayesian statistics.
Biology > Bioinformatics > Online Services > Protein Analysis
protein structure prediction threading force field wurst sausage torda fold recognition
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services > Protein Analysis
Ligand search engine to EBI Macromolecule Structure Database. Provides PDB ID codes with further visualization and statistics charts.
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Calculated using the FASTA amino acid sequence and pKa values for. Allows consideration of post-translational modifications.
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3. MSDmotif
Service for protein sequence motifs detection. Search based on the small 3D motifs defined by J.Milner-White.
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4. Swiss-Model
Automated comparative protein modelling server to make protein modelling accessible to biochemists and molecular biologists worldwide - from GlaxoWellcome Experimental Research, Geneva, Switzerland.
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5. Dali server
The Dali server is a network service for comparing protein structures in 3D.
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Most widely used server for analysing protein sequences, searching protein databases, and predicting protein structure - from Columbia Univ.
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7. SSM
Provides interactive service for matching protein structures in 3D and looking for structural homologues in PDB and SCOP databases, as well as in user-uploaded sets of structures.
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8. JAligner
Open source Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.
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Phyre is a free for academics service for predicting the 3-dimensional structure of a protein amino acid sequence.
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Combines sequence and structural information for predicting the structure and/or function of your protein sequence, and can detect remote homologies beyond PSI-Blast.
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