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NUMODs Motifs Finder
38438
NUMODs Motifs Finder
http://bioinfo.weizmann.ac.il/~naaman1/NUMODs/
Finds Nuclease-Associated Modular DNA-binding Domains (NUMODs) in protein sequences
Biology > Bioinformatics > Online Services > Protein Analysis
Jan 6, 2008
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Other links at Biology > Bioinformatics > Online Services > Protein Analysis
1. Jpred
Secondary protein structure prediction from amino acid sequence; based on a consensus from several methods including DSC, PHD, NNSSP, PREDATOR, ZPRED, and MULPRED.
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Bioinformatics research group offering organism specific information (Yeast, Cress) as well as search tools for public databases.
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Online software for protein analysis from the Swiss Institute of Bioinformatics (SIB).
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Most widely used server for analysing protein sequences, searching protein databases, and predicting protein structure - from Columbia Univ.
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5. ConSurf
Identifies functionally important regions on the surface of a protein or domain, of known three-dimensional (3D) structure using the phylogenetic relations between close sequence homologues.
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The SWISS-PROT database contains high-quality annotation, is non-redundant and cross-referenced to many other databases. SWISS-PROT is accompanied by TrEMBL, a computer-annotated supplement, which contains the translations of all coding sequences (CDS) present in the EMBL Nucleotide Sequence Database, which are not yet integrated into SWISS-PROT.
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Calculated using the FASTA amino acid sequence and pKa values for. Allows consideration of post-translational modifications.
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3D protein structure prediction from amino acid sequence. Includes MEMSAT for transmembrane topology prediction, GenTHREADER and mGenTHREADER for fold recognition.
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9. Swiss-Model
Automated comparative protein modelling server to make protein modelling accessible to biochemists and molecular biologists worldwide - from GlaxoWellcome Experimental Research, Geneva, Switzerland.
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Online backtranslation tool for translating a protein sequence into a DNA sequence. The codon usage can be downloaded from a database and adjusted manually for each amino acid, if required. Java applet.
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