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Phrap/Consed
38521
Phrap/Consed
http://www.phrap.org/
DNA sequence assembler and finishing tools from the UW Genome Center.
Biology > Bioinformatics > Software
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software
1. MELTING
Computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions.
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2. Darwin
An interactive tool for peptide and nucleotide sequence analysis.
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3. Friend
An integrated multiple structure visualization and multiple sequence alignment application. Avaliable for Windows, Linux
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NSF supported project to make old computers accessible to new software in bioinformatics. Provides transitional and supplemental support, especially in structual biology, for software packages on various platforms.
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5. Genespotter
Commercial Windows software for analyzing biochip image data.
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6. GDE
An integrated linux environment for bioinformatics and evolutionary analysis based on the Genetic Data Environment (GDE). Contains binaries for Linux and Mac OS X, documentation, screenshots, references, and organism specific interfaces.
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Open source software developed by Timo Lassmann for multiple sequence alignment, including Kalign, Kalignvu and Mumsa.
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A free sequence database application for Unix. It includes a sequence editor, several sequence aligners, phylogeny reconstruction tools, probe/primer search and generation, genome annotation and visualization. In addition to the integrated user-interface the ARB database can be accessed using Perl or C.
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10. APBioKnoppix
Knoppix based bioinformatics software tools. Bootable from CD.
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