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NCBI BLAST

38522 NCBI BLAST http://www.ncbi.nlm.nih.gov/BLAST/ BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA. Biology > Bioinformatics > Software blast   basic   local   alignment   search   tool   sequence   similarity   homology   bioinformatics Jan 6, 2008  

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Other links at Biology > Bioinformatics > Software

A Linux/Unix visualization software system for evaluation of hybridisation experiments.
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Profiles protein sequence data using hidden Markov models of a statistical descriptions of a sequence family's consensus. HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis.
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XP.
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An integrated multiple structure visualization and multiple sequence alignment application. Avaliable for Windows, Linux
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Computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions.
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The Washington University improved version of BLAST. Free for academic users.
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GoCore is an free Excel based tool for protein sequence alignment, comparisons and functional predictions in a simple, visually appealing, manner.
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Knoppix based bioinformatics software tools. Bootable from CD.
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A freeware Java application that does many standard types of DNA and protein sequence analysis tasks.
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BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA.
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