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FASTA
38524
FASTA
ftp://ftp.virginia.edu/pub/fasta
William Pearson's package for fast sequence comparison tools.
Biology > Bioinformatics > Software
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software
1. STRAP
Software supports the analysis of hundreds of proteins and integrates aa sequence, secondary structure, 3D-structure and genomic- and mRNA-sequence, and residue annotation.
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2. STRING
Search for Tandem Repeats IN Genomes. Includes C source code and examples.
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3. limmaGUI
A graphical user interface for linear modelling of cDNA and oligonucleotide microarray data to identify differentially expressed genes.
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4. AnnHyb
Free software for working with and managing nucleotide sequences in multiple formats. Features include sequence annotation, restriction analysis, pattern searching, retrieval from servers. Released under GNU Public Licence.
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A tool designed for efficient knowledge and data capture from electronic resources for sharing, mining and presentation purposes.
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6. Gints
Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English.
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7. NCBI BLAST
BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA.
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8. MELTING
Computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions.
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9. EMBOSS
The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprietary systems like GCG.
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10. FASTA Convertor
Free Windows tool for merging multiple FASTA files into a single FASTA file.
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