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PHRED
38526
PHRED
http://www.genome.washington.edu/UWGC/analysistools/Phred.cfm
A widely-used program for base calling DNA sequencing trace files. Source code available and free for non-commecial users.
Biology > Bioinformatics > Software
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software
1. BioEdit
2. NCBI BLAST
BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA.
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3. Sfold
Predicts probable RNA secondary structures, assesses target accessibility, and provides tools for the rational design of RNA-targeting nucleic acids. The web server version is free for academic use.
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4. pDRAW32
Freeware DNA cloning, analysis and visualization software.
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5. SeWeR
An integrated portal for common web-based bioinformatics services. Built in Javascript as a standalone browser application.
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6. KoriBlast
7. DNAMAN
Commercial software for DNA and Protein sequence analysis and manipulation. Available for Windows and Mac OS X.
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8. DNPTrapper
An Linux assembly editing and visualization tool specifically designed for manual analysis and finishing of repeated regions.
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9. limmaGUI
A graphical user interface for linear modelling of cDNA and oligonucleotide microarray data to identify differentially expressed genes.
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10. EMBOSS
The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprietary systems like GCG.
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