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GDE
38527
GDE
http://www.bioafrica.net/GDElinux/index.html
An integrated linux environment for bioinformatics and evolutionary analysis based on the Genetic Data Environment (GDE). Contains binaries for Linux and Mac OS X, documentation, screenshots, references, and organism specific interfaces.
Biology > Bioinformatics > Software
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software
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Search for Tandem Repeats IN Genomes. Includes C source code and examples.
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Offers a range of free software tools for annotating an entire genome, assembling sequences, gap closing and analysis of microarrays.
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NSF supported project to make old computers accessible to new software in bioinformatics. Provides transitional and supplemental support, especially in structual biology, for software packages on various platforms.
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5. MIRA
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7. XDigitize
A Linux/Unix visualization software system for evaluation of hybridisation experiments.
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8. BioEdit
A free sequence database application for Unix. It includes a sequence editor, several sequence aligners, phylogeny reconstruction tools, probe/primer search and generation, genome annotation and visualization. In addition to the integrated user-interface the ARB database can be accessed using Perl or C.
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Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format.
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