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STRING
38531
STRING
http://www.caspur.it/~castri/STRING/
Search for Tandem Repeats IN Genomes. Includes C source code and examples.
Biology > Bioinformatics > Software
Jan 6, 2008
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Windows software that computes and charts codon and amino acid frequencies in whole genomes. Produces fully customizable scatter plots with the possibility to export graphics or text files for further analysis. Free for academic users.
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Free Windows tool for merging multiple FASTA files into a single FASTA file.
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3. PHRED
A widely-used program for base calling DNA sequencing trace files. Source code available and free for non-commecial users.
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4. WU-BLAST
The Washington University improved version of BLAST. Free for academic users.
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Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format.
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Open source software developed by Timo Lassmann for multiple sequence alignment, including Kalign, Kalignvu and Mumsa.
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7. GoCore
GoCore is an free Excel based tool for protein sequence alignment, comparisons and functional predictions in a simple, visually appealing, manner.
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8. JSTRING
Java program for searching Tandem Repeats (TR) in a DNA sequence. It shows the results also in a graphical format.
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9. KoriBlast
10. Darwin
An interactive tool for peptide and nucleotide sequence analysis.
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