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MedScan

38540 MedScan http://www.ariadnegenomics.com/products/medscan.html Commercial Windows natural language processing software for the automated extraction of biological data from scientific literature. Biology > Bioinformatics > Software pubmed   bioinformatics   data   mining   literature   medline   medscan   natural   language   processing   nlp   pathway   analysis   pharma   pharmaceutical   pharmacy   pre-clinical   protein   interaction   protein-protein   scientific   sci Jan 6, 2008  

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Other links at Biology > Bioinformatics > Software

A tool designed for efficient knowledge and data capture from electronic resources for sharing, mining and presentation purposes.
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Predicts probable RNA secondary structures, assesses target accessibility, and provides tools for the rational design of RNA-targeting nucleic acids. The web server version is free for academic use.
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An open, extensible web-based collaborative platform for microarray gene expression, sequence and PPI data analysis, exposing distinct chainable components for clustering, pattern discovery, statistics, machine-learning algorithms and visualization.
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Profiles protein sequence data using hidden Markov models of a statistical descriptions of a sequence family's consensus. HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis.
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Free software for working with and managing nucleotide sequences in multiple formats. Features include sequence annotation, restriction analysis, pattern searching, retrieval from servers. Released under GNU Public Licence.
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Open source Java software for checking and conversion of MicroArray Array Design data file (ADF -Array Design File- MAGE-ML).
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Commercial Windows software for batch handling and analysis of nucleotide and protein sequences.
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The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprietary systems like GCG.
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The Washington University improved version of BLAST. Free for academic users.
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10. MARBL
MARBL is a free (GPL) system to index the text portions of GenBank and associated NLM abstracts. Based on Mumps and the MDH.
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