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MIRA
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MIRA
http://chevreux.org/projects_mira.html
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Biology > Bioinformatics > Software
sequence assembly. mira genome assembly est
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software
1. Darwin
An interactive tool for peptide and nucleotide sequence analysis.
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Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format.
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Windows software that computes and charts codon and amino acid frequencies in whole genomes. Produces fully customizable scatter plots with the possibility to export graphics or text files for further analysis. Free for academic users.
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5. NCBI BLAST
BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA.
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Open source software developed by Timo Lassmann for multiple sequence alignment, including Kalign, Kalignvu and Mumsa.
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7. DNAMAN
Commercial software for DNA and Protein sequence analysis and manipulation. Available for Windows and Mac OS X.
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8. DNPTrapper
An Linux assembly editing and visualization tool specifically designed for manual analysis and finishing of repeated regions.
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9. pDRAW32
Freeware DNA cloning, analysis and visualization software.
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10. Sockeye
3D visualisation platform for Comparative Genomics visualisation.
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