+ Main Category
Biology: 18072
Agriculture: 7697
Horticulture: 3991
Forestry: 845
Geography: 5128
Environment: 5567
Research: 2417
Society: 448
+ Tell a Friend
Fill out the information below to email a friend a brief note about 'TropHort: Biology, Agriculture and Geography'
+ Top 10
+ Directory Statistics
Links: 41731
Categories: 7194
Registered Users: 750
Mailing List Subscribers: 153
+ Pagerank Statistics
+ Join Mailing List
Joining mailing list will entitle you
to receive occasional emails informing you of news and
updates to the site and any special offers that may be
of interest to you.
Tandem Repeats Finder
38547
Tandem Repeats Finder
http://tandem.bu.edu/trf/trf.html
Locates and displays tandem repeats in DNA sequences.
Biology > Bioinformatics > Software
Jan 6, 2008
Write a Review
Add to My Favorite
Refer it to Friend
Report Broken Link
Other links at Biology > Bioinformatics > Software
1. STRING
Search for Tandem Repeats IN Genomes. Includes C source code and examples.
Category:
2. GDE
An integrated linux environment for bioinformatics and evolutionary analysis based on the Genetic Data Environment (GDE). Contains binaries for Linux and Mac OS X, documentation, screenshots, references, and organism specific interfaces.
Category:
3. Phrap/Consed
DNA sequence assembler and finishing tools from the UW Genome Center.
Category:
4. STRAP
Software supports the analysis of hundreds of proteins and integrates aa sequence, secondary structure, 3D-structure and genomic- and mRNA-sequence, and residue annotation.
Category:
5. ADF MAGE-ML
Open source Java software for checking and conversion of MicroArray Array Design data file (ADF -Array Design File- MAGE-ML).
Category:
6. DNA Counter
Small free Windows program to calculate nucleotides frequencies in DNA sequences.
Category:
7. AnnHyb
Free software for working with and managing nucleotide sequences in multiple formats. Features include sequence annotation, restriction analysis, pattern searching, retrieval from servers. Released under GNU Public Licence.
Category:
Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format.
Category:
9. DNPTrapper
An Linux assembly editing and visualization tool specifically designed for manual analysis and finishing of repeated regions.
Category:
10. Sfold
Predicts probable RNA secondary structures, assesses target accessibility, and provides tools for the rational design of RNA-targeting nucleic acids. The web server version is free for academic use.
Category:
