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Sockeye
38555
Sockeye
http://www.bcgsc.ca/gc/bomge/sockeye/
3D visualisation platform for Comparative Genomics visualisation.
Biology > Bioinformatics > Software
Jan 6, 2008
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1. EMBOSS
The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprietary systems like GCG.
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A freeware Java application that does many standard types of DNA and protein sequence analysis tasks.
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3. NCBI BLAST
BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA.
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Windows software that computes and charts codon and amino acid frequencies in whole genomes. Produces fully customizable scatter plots with the possibility to export graphics or text files for further analysis. Free for academic users.
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5. MARBL
MARBL is a free (GPL) system to index the text portions of GenBank and associated NLM abstracts. Based on Mumps and the MDH.
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6. Sockeye
3D visualisation platform for Comparative Genomics visualisation.
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7. XDigitize
A Linux/Unix visualization software system for evaluation of hybridisation experiments.
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8. MIRA
9. ADF MAGE-ML
Open source Java software for checking and conversion of MicroArray Array Design data file (ADF -Array Design File- MAGE-ML).
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10. BioEdit
