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Seqtools
38556
Seqtools
http://www.seqtools.dk
Commercial Windows software for batch handling and analysis of nucleotide and protein sequences.
Biology > Bioinformatics > Software
dna nucleotide protein microarray expression sage primer bioinformatics software blast search batch ncbi entrez sequence
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software
1. JSTRING
Java program for searching Tandem Repeats (TR) in a DNA sequence. It shows the results also in a graphical format.
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2. Darwin
An interactive tool for peptide and nucleotide sequence analysis.
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3. GDE
An integrated linux environment for bioinformatics and evolutionary analysis based on the Genetic Data Environment (GDE). Contains binaries for Linux and Mac OS X, documentation, screenshots, references, and organism specific interfaces.
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Offers a range of free software tools for annotating an entire genome, assembling sequences, gap closing and analysis of microarrays.
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Windows software that computes and charts codon and amino acid frequencies in whole genomes. Produces fully customizable scatter plots with the possibility to export graphics or text files for further analysis. Free for academic users.
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6. HMMER
Profiles protein sequence data using hidden Markov models of a statistical descriptions of a sequence family's consensus. HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis.
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7. PHRED
A widely-used program for base calling DNA sequencing trace files. Source code available and free for non-commecial users.
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8. KoriBlast
9. ADF MAGE-ML
Open source Java software for checking and conversion of MicroArray Array Design data file (ADF -Array Design File- MAGE-ML).
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NSF supported project to make old computers accessible to new software in bioinformatics. Provides transitional and supplemental support, especially in structual biology, for software packages on various platforms.
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