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SeWeR

38558 SeWeR http://bioinformatics.org/sewer/ An integrated portal for common web-based bioinformatics services. Built in Javascript as a standalone browser application. Biology > Bioinformatics > Software bioinformatics   sequence   analysis   restriction   digestion   retrieval   alignment   pcr   oligo   design   primary   structure   secondary   structureanalysis   bookmarklet   format   conversion   assembly   blast   database   se Jan 6, 2008  

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Other links at Biology > Bioinformatics > Software

Freeware DNA cloning, analysis and visualization software.
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3D visualisation platform for Comparative Genomics visualisation.
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Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English.
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Profiles protein sequence data using hidden Markov models of a statistical descriptions of a sequence family's consensus. HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis.
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Software supports the analysis of hundreds of proteins and integrates aa sequence, secondary structure, 3D-structure and genomic- and mRNA-sequence, and residue annotation.
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Free Windows tool for merging multiple FASTA files into a single FASTA file.
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An open, extensible web-based collaborative platform for microarray gene expression, sequence and PPI data analysis, exposing distinct chainable components for clustering, pattern discovery, statistics, machine-learning algorithms and visualization.
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An integrated portal for common web-based bioinformatics services. Built in Javascript as a standalone browser application.
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Windows software that computes and charts codon and amino acid frequencies in whole genomes. Produces fully customizable scatter plots with the possibility to export graphics or text files for further analysis. Free for academic users.
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NSF supported project to make old computers accessible to new software in bioinformatics. Provides transitional and supplemental support, especially in structual biology, for software packages on various platforms.
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