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Genome-tools Web Interface
38560
Genome-tools Web Interface
http://sourceforge.net/projects/genome-tools/
Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format.
Biology > Bioinformatics > Software
open source development developers projects downloads ostg va software sf.net sourceforge
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software
1. STRING
Search for Tandem Repeats IN Genomes. Includes C source code and examples.
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2. AnnHyb
Free software for working with and managing nucleotide sequences in multiple formats. Features include sequence annotation, restriction analysis, pattern searching, retrieval from servers. Released under GNU Public Licence.
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3. pDRAW32
Freeware DNA cloning, analysis and visualization software.
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4. Gints
Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English.
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A free sequence database application for Unix. It includes a sequence editor, several sequence aligners, phylogeny reconstruction tools, probe/primer search and generation, genome annotation and visualization. In addition to the integrated user-interface the ARB database can be accessed using Perl or C.
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6. XDigitize
A Linux/Unix visualization software system for evaluation of hybridisation experiments.
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7. PHRED
A widely-used program for base calling DNA sequencing trace files. Source code available and free for non-commecial users.
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8. EMBOSS
The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprietary systems like GCG.
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9. MELTING
Computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions.
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10. FASTA Convertor
Free Windows tool for merging multiple FASTA files into a single FASTA file.
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