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msa.cgb.ki.se
38564
msa.cgb.ki.se
http://msa.cgb.ki.se/cgi-bin/msa.cgi
Open source software developed by Timo Lassmann for multiple sequence alignment, including Kalign, Kalignvu and Mumsa.
Biology > Bioinformatics > Software
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software
1. biOpen
Commercial Mac OS X sequence analysis and structure visualization software.
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NSF supported project to make old computers accessible to new software in bioinformatics. Provides transitional and supplemental support, especially in structual biology, for software packages on various platforms.
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3. Seqtools
Commercial Windows software for batch handling and analysis of nucleotide and protein sequences.
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4. DNAMAN
Commercial software for DNA and Protein sequence analysis and manipulation. Available for Windows and Mac OS X.
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A free sequence database application for Unix. It includes a sequence editor, several sequence aligners, phylogeny reconstruction tools, probe/primer search and generation, genome annotation and visualization. In addition to the integrated user-interface the ARB database can be accessed using Perl or C.
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6. KoriBlast
7. Friend
An integrated multiple structure visualization and multiple sequence alignment application. Avaliable for Windows, Linux
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8. MELTING
Computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions.
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9. DNPTrapper
An Linux assembly editing and visualization tool specifically designed for manual analysis and finishing of repeated regions.
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10. FASTA
William Pearson's package for fast sequence comparison tools.
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