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MARBL

38568 MARBL http://sidhe.cs.uni.edu/marbl.html MARBL is a free (GPL) system to index the text portions of GenBank and associated NLM abstracts. Based on Mumps and the MDH. Biology > Bioinformatics > Software Jan 6, 2008  

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Other links at Biology > Bioinformatics > Software

1. MIRA
projects.
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Java program for searching Tandem Repeats (TR) in a DNA sequence. It shows the results also in a graphical format.
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Commercial Windows software for batch handling and analysis of nucleotide and protein sequences.
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Search for Tandem Repeats IN Genomes. Includes C source code and examples.
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Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English.
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The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprietary systems like GCG.
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Commercial Mac OS X sequence analysis and structure visualization software.
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Software supports the analysis of hundreds of proteins and integrates aa sequence, secondary structure, 3D-structure and genomic- and mRNA-sequence, and residue annotation.
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3D visualisation platform for Comparative Genomics visualisation.
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An open, extensible web-based collaborative platform for microarray gene expression, sequence and PPI data analysis, exposing distinct chainable components for clustering, pattern discovery, statistics, machine-learning algorithms and visualization.
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