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Bioperl.org
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Bioperl.org
http://www.bioperl.org
The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an online resource for modules, scripts, and web links.
Biology > Bioinformatics > Software > Software Development
main page api docs advanced bioperl tutorials users db publications biosql bioinformatics and perl 5.10
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software > Software Development
Integrates multiple public bioinformatics databases into a single relational database system within a common bioinformatics schema.
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2. PISE
Given an abstract definition of a program's parameters, PISE can generate whatever style of interface from the configuration module.
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3. BioPHP
An open source project to develop PHP code and scripts for biocomputing. A wiki-like service allows collaboration between developers.
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4. InterMine
InterMine is an general-purpose object-oriented data warehouse system developed as part of the FlyMine project and made available as stand-alone open-source software.
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C++ framework for rapid software prototyping in molecular modeling.
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6. AceDB
A hierarchical database system for displaying genomic data (originally C. elegans), suitable also for displaying other scientific data.
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XEMBL provides access to the EMBL/GenBank/DDBJ Nucleotide Sequence Database, providing output in various XML standards.
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PAL library is a Java toolkit for determining evolutionary trends.
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A framework to perform electrophysiological simulations. Useful for simulations of action potentials, individual ionic currents, and changes in ionic concentrations.
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Guide to running this programming language. Library contains programs to compute pairwise alignments, phylogenetic trees, multiple sequence alignments, and to make secondary structure predictions.
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