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BioPython
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BioPython
http://biopython.org/
The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.
Biology > Bioinformatics > Software > Software Development
biopython download news
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software > Software Development
Guide to running this programming language. Library contains programs to compute pairwise alignments, phylogenetic trees, multiple sequence alignments, and to make secondary structure predictions.
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PAL library is a Java toolkit for determining evolutionary trends.
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3. BioLisp.org
BioLisp.org is a public resource supporting scientists who use Lisp to develop intelligent applications in the biological sciences. We collect and disseminate Lisp biocomputing code, and gather pointers to Lisp and other Intelligent BioComputing methods.
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A framework to perform electrophysiological simulations. Useful for simulations of action potentials, individual ionic currents, and changes in ionic concentrations.
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5. BioPHP
An open source project to develop PHP code and scripts for biocomputing. A wiki-like service allows collaboration between developers.
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6. InterMine
InterMine is an general-purpose object-oriented data warehouse system developed as part of the FlyMine project and made available as stand-alone open-source software.
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7. BioRuby
BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language.
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8. BioPython
The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.
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9. NeoBio
An open source library of Java bioinformatics algorithms. The current version consists mainly of sequence alignment algorithms such as Needleman- Wunsch and Smith-Waterman.
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10. Bioperl.org
The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an online resource for modules, scripts, and web links.
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