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BioRuby
38585
BioRuby
http://bioruby.org
BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language.
Biology > Bioinformatics > Software > Software Development
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software > Software Development
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Code generator for writing dynamic programming programs.
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A framework to perform electrophysiological simulations. Useful for simulations of action potentials, individual ionic currents, and changes in ionic concentrations.
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Extendable parallel system for automatic genome analysis. Software for analysing all potential genes in a defined genome region. Given two marker names, can output reports of genomic features between them. Features for converting between naming systems, sequence retrieval, E-PCR, gene prediction, similarity search, protein pattern search, and report formatting. Written in Java.
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6. BioQuery
Tools that searches multiple biomedical databases from your desktop.
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7. BioJava.org
The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.
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The National Cancer Institute's Center for Bioinformatics produces the caCORE infrastructure, an open-source enterprise architecture for cancer informatics.
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9. Bioperl.org
The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an online resource for modules, scripts, and web links.
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10. JCell
A Java based framework to reconstruct genetic interactions from microarray data.
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