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InterMine
38589
InterMine
http://www.intermine.org
InterMine is an general-purpose object-oriented data warehouse system developed as part of the FlyMine project and made available as stand-alone open-source software.
Biology > Bioinformatics > Software > Software Development
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software > Software Development
The Bioconductor project produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary emphasis on inference using DNA microarrays, built mostly using R.
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2. InterMine
InterMine is an general-purpose object-oriented data warehouse system developed as part of the FlyMine project and made available as stand-alone open-source software.
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3. BioQuery
Tools that searches multiple biomedical databases from your desktop.
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BiBiServ supports Internet-based collaborative research, software development and distance education in bioinformatics.
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5. BioPython
The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.
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6. Sight
Extendable parallel system for automatic genome analysis. Software for analysing all potential genes in a defined genome region. Given two marker names, can output reports of genomic features between them. Features for converting between naming systems, sequence retrieval, E-PCR, gene prediction, similarity search, protein pattern search, and report formatting. Written in Java.
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7. MolTalk
Software development for structural bioinformatics. Runs on Unix, Windows and MacOSX.
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A framework to perform electrophysiological simulations. Useful for simulations of action potentials, individual ionic currents, and changes in ionic concentrations.
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9. EST2uni
A tool to analyze a set of ESTs. Cleans, clusters and annotates the sequences and prepares a web site to browse the results in a complete automatic way.
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10. BioJava.org
The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.
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