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JCell
38592
JCell
http://www-ra.informatik.uni-tuebingen.de/software/JCell/
A Java based framework to reconstruct genetic interactions from microarray data.
Biology > Bioinformatics > Software > Software Development
gene regulatory network expression dna microarray chip pathway artificial emryology evolutionary engineering
Jan 6, 2008
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A set of software tools that filter, format, and merge data in tabular or common biological formats. Organized as a classified collection of Perl one-liners.
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Analytical tools and SQL scripts that solve common problems in drug discovery.
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3. AceDB
A hierarchical database system for displaying genomic data (originally C. elegans), suitable also for displaying other scientific data.
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Predict metabolic pathways from genomes and graphically depict pathways. Visualize gene expression data on a metabolic pathway map. Generate a metabolic wall chart. Includes a genome browser and support for transcriptional regulatory networks.
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5. BioLisp.org
BioLisp.org is a public resource supporting scientists who use Lisp to develop intelligent applications in the biological sciences. We collect and disseminate Lisp biocomputing code, and gather pointers to Lisp and other Intelligent BioComputing methods.
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C++ framework for rapid software prototyping in molecular modeling.
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7. AcePerl
A framework to perform electrophysiological simulations. Useful for simulations of action potentials, individual ionic currents, and changes in ionic concentrations.
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9. EST2uni
A tool to analyze a set of ESTs. Cleans, clusters and annotates the sequences and prepares a web site to browse the results in a complete automatic way.
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PAL library is a Java toolkit for determining evolutionary trends.
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