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PISE
38593
PISE
http://www.pasteur.fr/recherche/unites/sis/Pise/
Given an abstract definition of a program's parameters, PISE can generate whatever style of interface from the configuration module.
Biology > Bioinformatics > Software > Software Development
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software > Software Development
1. Sight
Extendable parallel system for automatic genome analysis. Software for analysing all potential genes in a defined genome region. Given two marker names, can output reports of genomic features between them. Features for converting between naming systems, sequence retrieval, E-PCR, gene prediction, similarity search, protein pattern search, and report formatting. Written in Java.
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2. Bioperl.org
The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an online resource for modules, scripts, and web links.
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3. AcePerl
4. BioPHP
An open source project to develop PHP code and scripts for biocomputing. A wiki-like service allows collaboration between developers.
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The Bioconductor project produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary emphasis on inference using DNA microarrays, built mostly using R.
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6. JCell
A Java based framework to reconstruct genetic interactions from microarray data.
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7. Dynamite
Code generator for writing dynamic programming programs.
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BiBiServ supports Internet-based collaborative research, software development and distance education in bioinformatics.
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9. InterMine
InterMine is an general-purpose object-oriented data warehouse system developed as part of the FlyMine project and made available as stand-alone open-source software.
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XEMBL provides access to the EMBL/GenBank/DDBJ Nucleotide Sequence Database, providing output in various XML standards.
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