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The XEMBL Project

38594 The XEMBL Project http://www.ebi.ac.uk/xembl/ XEMBL provides access to the EMBL/GenBank/DDBJ Nucleotide Sequence Database, providing output in various XML standards. Biology > Bioinformatics > Software > Software Development bioinformatics   ebi   xembl   embl   databases   xml   web   service   soap   wsdl   bsml   agave   standards   corba   webservice   nucleotide   sequences   interoperability Jan 6, 2008  

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Other links at Biology > Bioinformatics > Software > Software Development

BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language.
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The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an online resource for modules, scripts, and web links.
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Tools that searches multiple biomedical databases from your desktop.
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OO Interface to AceDB
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The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.
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The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.
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A tool to analyze a set of ESTs. Cleans, clusters and annotates the sequences and prepares a web site to browse the results in a complete automatic way.
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A framework to perform electrophysiological simulations. Useful for simulations of action potentials, individual ionic currents, and changes in ionic concentrations.
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Simple but powerful data exchange language, suitable for serializing biological data objects.
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InterMine is an general-purpose object-oriented data warehouse system developed as part of the FlyMine project and made available as stand-alone open-source software.
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